Is there any way to place arconix-shortcodes.js in a folder under the root directory rather than the root directory itself?
Yes, but it gets a little more complicated.
you’d add the following to your theme’s functions.php
add_filter( 'pre_register_arconix_shortcodes_js', '__return_false' );
That will prevent my shortcodes javascript from loading at all. Then you’d have to register your script using whatever location you’d like.
add_action( 'wp_enqueue_scripts', 'arconix_scripts' );
function arconix_scripts() {
wp_register_script( 'arconix-shortcodes-js', [ENTER PATH HERE] . '/arconix-shortcodes.js', array( 'jquery-tools' ), '1.0', true );
}