MegaMuc,
I was able to migrate my website from qTranslate-x to WPML and that got my google search results back to normal. Below is the post I had put on my own tread about this.
If anyone ever finds a way to modify the Hreflang tags that are automatically created by the qTranslate-x plugin then you wont need to migrate, but I could not figure it out.
“For anyone else who has this issue. The root cause has got to be the Hreflang tags generated by qTranslate-x. I have made a local copy of my site and used WPML and their qTranslate X Cleanup and WPML Import plugin to successfully migrate from qTranslate-x to WPML with minimal work required.
Some page titles may also be lost and will just show the language that was there (en). Menus, Widgets, Posts, Pages and any other custom fields stored in WordPress may need to be fixed slightly for language tags or lost titles.
I am waiting for my webhost to upload my site and switch it live by the end of the week. Ill report back if there are any issues with google not resolving to the new Hreflang tags. But I can already see that my website Hreflangs are now correctly pointing my primary language EN to https://www.domain.com instead of https://www.domain.com/en, sublanguages are pointed to https://www.domain.com/lang=?”
-and this worked.