Hi,
Sorry for the inconvenience! We didn’t hear this kind of issue before.
This plugin works with a shortcode. The carousel section is inserted by a simple shortcode and it creates a totally different section for a carousel. Its CSS styles are well-parented. It shouldn’t affect your other layout.
And, if the shortcode is removed from the homepage, it has no function to the homepage then.
We guess there might be an unexpected issue. It would better if you could open a support ticket in the forum for us to explore. Please open a support ticket describing the issue, we will help to fix any kind of issue there.
Waiting to hear from you soon.