Help! BadWare on my site

Download a copy of WordPress to your computer and unzip it somewhere.

Log in to your GoDaddy hosting account. Click on the appropriate Hosting Account. On the ”’Hosting”’ tab, click ”’FTP File Manager”’ in the ”’Tools”’ section.

Navigate to [your_wordpress_install]/wp-includes/. Find functions.php (probably on page 3 in the upper-right area), right-click on it and rename to functions.old.php or whatever you want.

Now, click Upload file, Browse, and select functions.php from [your downloaded WordPress]/wp-includes/.

Hopefully you can now access your site. But, it sounds like you have to find any malware on your site and remove it. That’s beyond my abilities, so hopefully someone else will come along to help you with that part of your problem.

You need to start working your way through these resources:
https://codex.www.ads-software.com/FAQ_My_site_was_hacked
https://www.ads-software.com/support/topic/268083#post-1065779
https://smackdown.blogsblogsblogs.com/2008/06/24/how-to-completely-clean-your-hacked-wordpress-installation/
https://ottopress.com/2009/hacked-wordpress-backdoors/

Additional Resources:
Hardening WordPress
https://sitecheck.sucuri.net/scanner/
https://www.unmaskparasites.com/
https://blog.sucuri.net/2012/03/wordpress-understanding-its-true-vulnerability.html

Thank you AK Ted. I did that and now I get the following error:

Warning: require(/home/content/85/9076885/html/wp-includes/pomo/mo.php) [function.require]: failed to open stream: No such file or directory in /home/content/85/9076885/html/wp-settings.php on line 86

Fatal error: require() [function.require]: Failed opening required ‘/home/content/85/9076885/html/wp-includes/pomo/mo.php’ (include_path=’.:/usr/local/php5/lib/php’) in /home/content/85/9076885/html/wp-settings.php on line 86

Please replace your paths listed with /home/content/XX/XXXXXXXX/..., the second numbers (8 digits) are unique to your hosting account. I don’t know if there’s a security risk or not, but better safe than sorry.

I’m not sure, but you could try uploading that file as well. But, since you were warned by your host that your site was infected, you should really follow those links that Esmi listed above.

Sorry, probably a dumb question. But I do not see any paths with home/content. Where should I be looking in the FTP?

The home/content/xx/xxxxxxxx/ is the private part of your site. html/ is your public root, equivalent to www.your-domain.com/. So ignore everything before (and including) html/.