How to insert the wp reset query(); ??

I am a newbie at php and I am having a problem with my site itrap.org, which is using the Focused Magazine theme. The problem is all of my post excerpts on the front page (static) are identical to the most recent featured post. This problem is only on the front page of the site. I have never had to manually insert my summaries because before this issue they would automatically take text from the post and use it as the excerpt. Right now I am manually entering the excerpts and I would like to figure out a way to have it set automatically again.

I am using the featured post plugin and noticed this in the instructions:

Note: Please just after the loop you have called the custom query don’t forget to add wp_reset_query(); after the loop, else you will have all other normal post loops showing the featured posts.

Could this be the issue? If so, where and how do I insert the wp reset query(); ??