Menu is not working after changing settings and the admin bar is gone

I′m not sure if you guys can help with this because I`m not sure if it′s an Enfold theme problem, but I have never encountered this problem before with either enfold or any other theme.

I have sat my WP installation up so that it′s lying in a sub folder called WordPress.
I′m using the standard index.php file to call up the blog-header

<?php
/**
 * Front to the WordPress application. This file doesn't do anything, but loads
 * wp-blog-header.php which does and tells WordPress to load the theme.
 *
 * @package WordPress
 */

/**
 * Tells WordPress to load the WordPress theme and output it.
 *
 * @var bool
 */
define('WP_USE_THEMES', true);

/** Loads the WordPress Environment and Template */
require('./wordpress/wp-blog-header.php');
?>

Under general settings I have gone from having /wordpress on both fields till just one of them like I always do.
My probemlem

The problem is that now the menu is not working and the admin bar is gone even when logged in.

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