WP-CLI cannot display all Plugins anymore

Hi Aaron,

we stumbled over some issues using your plugin in combination with WP-CLI.
We run the latest WordPress (4.9.1) with latest WP-CLI (1.4.1). Using you plugin in this combination hides all plugins which aren’t controllable on a single site (thus being forced activated or network activated) from the WP-CLI. The issues just started recently as we used your plugin for a long time with no issues.

The issue looks like the following:

wp plugin list --all
+-------------------------+----------+--------+---------+
| name                    | status   | update | version |
+-------------------------+----------+--------+---------+
| affiliate-wp            | active   | none   | 2.1.8   |
| bne-flyout              | inactive | none   | 1.3.3   |
| duplicate-post          | inactive | none   | 3.2.1   |
| fv-wordpress-flowplayer | inactive | none   | 6.3.11  |
| gravityforms            | active   | none   | 2.2.5   |
| LayerSlider             | inactive | none   | 5.6.9   |
| wordpress-seo           | active   | none   | 5.9.3   |
| a-mu-plugin             | must-use | none   |         |
| sunrise.php             | dropin   | none   |         |
+-------------------------+----------+--------+---------+

Which should look like this:

wp plugin list --all --skip-plugins=multisite-plugin-manager
+-----------------------------------------------+----------------+--------+---------+
| name                                          | status         | update | version |
+-----------------------------------------------+----------------+--------+---------+
| affiliate-wp                                  | active         | none   | 2.1.8   |
| antispam-bee                                  | active-network | none   | 2.7.1   |
| bne-flyout                                    | inactive       | none   | 1.3.3   |
| cloner                                        | active-network | none   | 1.7.7   |
| cms-tree-page-view                            | active-network | none   | 1.4     |
| cookie-notice                                 | active-network | none   | 1.2.40  |
| domain-mapping                                | active-network | none   | 4.4.2.5 |
| duplicate-post                                | inactive       | none   | 3.2.1   |
| dynamic-widgets                               | active-network | none   | 1.5.13  |
| fv-wordpress-flowplayer                       | inactive       | none   | 6.3.11  |
| duracelltomi-google-tag-manager               | inactive       | none   | 1.7.2   |
| gravityforms                                  | active         | none   | 2.2.5   |
| gravityformscli                               | inactive       | none   | 1.0     |
| gravity-forms-google-analytics-event-tracking | inactive       | none   | 2.0.9   |
| gravityformsuserregistration                  | inactive       | none   | 3.8     |
| LayerSlider                                   | inactive       | none   | 5.6.9   |
| simple-jwt-authentication                     | active-network | none   | 1.1     |
| wordpress-importer                            | inactive       | none   | 0.6.3   |
| wp-piwik                                      | active-network | none   | 1.0.19  |
| wp-fail2ban                                   | active-network | none   | 3.5.3   |
| wp-mail-smtp                                  | inactive       | none   | 1.0.2   |
| wpmudev-updates                               | active-network | none   | 4.4     |
| wp-smush-pro                                  | inactive       | none   | 2.7.6   |
| wordpress-seo                                 | active         | none   | 5.9.3   |
| a-mu-plugin                                   | must-use       | none   |         |
| sunrise.php                                   | dropin         | none   |         |
+-----------------------------------------------+----------------+--------+---------+

It might be related to WordPress 4.9 / 4.9.1 and the multisite changes the core team built in. We haven’t encountered this issues earlier and haven’t updated WP-CLI since it was still working.

Thank you for your support and best Regards,

Jan