Solution copied from https://groups.google.com/forum/#!forum/cookiecontrol.
Found the issue:
FIND
var f=jQuery(this).attr(“checked”);var h=CookieControl;if(f==true){h.setCookie(“ccNoPopup”,”no”);
AND REPLACE IT BY:
var f=jQuery(this).attr(“checked”);var h=CookieControl;if(f==”checked”){h.setCookie(“ccNoPopup”,”no”);
Now the setting is remembered correctly!!!!