lajaro

Had the same problem . Might not be the best way, but I solved it by adding another if statement to functions.php to check if it’s the bottom nav. If not, it doesn’t do anything.

Original functions.php (pre PageNavi edits):

if ( $wp_query->max_num_pages > 1 ) : ?>
                <nav id="<?php echo $nav_id; ?>">
                        <h3 class="assistive-text"><?php _e( 'Post navigation', 'twentyeleven' ); ?></h3>
                        <div class="nav-previous"><?php next_posts_link( __( '<span class="meta-nav">←</span> Older posts', 'twentyeleven' ) ); ?></div>
                        <div class="nav-next"><?php previous_posts_link( __( 'Newer posts <span class="meta-nav">→</span>', 'twentyeleven' ) ); ?></div>
                </nav><!-- #nav-above -->
        <?php endif;

With PageNavi changes and code to not output top navi panel:

if ( $wp_query->max_num_pages > 1 ) : ?>
                <nav id="<?php echo $nav_id; ?>">
                <strong><?php if ($nav_id == "nav-below"):?></strong>
                        <h3 class="assistive-text"><?php _e( 'Post navigation', 'twentyeleven' ); ?></h3>
                        <!-- <div class="nav-previous"><?php next_posts_link( __( '<span class="meta-nav">←</span> Older posts', 'twentyeleven' ) ); ?></div>
                        <div class="nav-next"><?php previous_posts_link( __( 'Newer posts <span class="meta-nav">→</span>', 'twentyeleven' ) ); ?></div> -->
                        <strong><?php wp_pagenavi(); ?></strong>
                <strong><?php endif; ?></strong>
                </nav><!-- #nav-above -->
        <?php endif;

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