I am having the exact same problem. Can’t get any custom fields added with Custom Field Templates (CFT) to work with custom post types created by Custom Post Type UI.
There is an option call “Custom Post Type (comma-deliminated):” when in CFT. I have entered by my custom post type name there and updated, but this does not change anything?
Does anyone know what this option does? I assumed it was to direct CFT to use the custom post type.
One other thing – the default custom field template shows up on all Pages/Post edits. If you want it to show up on only one page, how is that done? Again, changing options don’t seem to affect anything for me.
This is an awesome plugin, but need to understand how it works (especially for custom post types).